Introduction
Computer simulation, also known as computer modelling, is the use of computers to develop and explore numerical models that reproduce the properties of materials, structures, processes or phenomena. Atomic-level computer simulation involves basing these models on the individual atoms and molecules (and sometimes electrons) that make up the material. The methods used range from rigorous (and computationally expensive) treatments derived from Schrödinger's equation - referred to as ab initio quantum mechanical methods - to rapid (but less detailed) empirical techniques which use approximate or "effective" functions to describe the forces between particles. The method chosen for any particular problem depends on the size of the system, the type of bonding in the material (ionic, covalent, etc), and the kind of information desired.
Simulation Groups and Researchers
Listed below are some research groups and individuals from around the globe using atomistic computer simulations to investigate ceramics include:
Australia
- Centre for Computational Molecular Science at the University of Queensland
- Computational Physics Group at RMIT University
- Nanochemistry Research Institute (NRI) at Curtin University
Austria
- Computational Quantum Theory Group at the Vienna University of Technology
- Computational Materials Science Group at the University of Vienna
Finland
Germany
- Department of Theory at the Fritz Haber Institute (Berlin) of the Max Planck Society
- Institute of Theoretical Chemistry at Stuttgart University
- Institute for Theoretical and Applied Physics (ITAP) at Stuttgart University
Ireland
- Computational Physics Group at Trinity College Dublin
- Theoretical and Computational Chemistry at Trinity College Dublin
Italy
- First Principles Molecular Dynamics Group at the International School for Advanced Studies (SISSA)
- Theoretical Chemistry Group at the University of Torino
Japan
- Computational Materials Design (CMD) Forum at the Japan Fine Ceramics Center (JFCC)
- Centre for Promoting Computational Science and Engineering (CPCSE) at the Japan Atomic Energy Research Institute (JAERI)
- Tanaka Laboratory at Kyoto University
- Condensed Matter Physics Laboratory at Niigata University
- Dr K. Tsuruta at Okayama University
- Laboratory for Molecular Materials Design at Tohoku University
- Materials and Structures Laboratory at the Tokyo Institute of Technology
- Research Institute for Computational Sciences at the National Institute of Advanced Science and Technology (AIST)
The Netherlands
- Computational Physics Group at the Delft University of Technology
- Theoretical Chemistry Group at the Eindhoven Institute of Technology
Switzerland
- Computational Chemistry and Physics Group at IBM Zurich
- Prof. J. Weber's Group at the University of Geneva
United Kingdom
- Computational Solid State Chemistry Group at Bath University
- Dr M. S. Islam at Bath University
- Theoretical Chemistry Group at Birmingham University
- Computational Solid State Chemistry Group at Bristol University
- Atomistic Simulation Group at Cambridge University
- Cambridge University Centre for Computational Chemistry (CUC3) at Cambridge University
- Mineral Sciences Group at Cambridge University
- Theory of Condensed Matter Group at Cambridge University
- Dr D. J. Willock at Cardiff University
- Computational Materials Science Group at CCLRC Daresbury Laboratory
- Molecular Simulation Group at CCLRC Daresbury Laboratory
- Dr D. C. Sayle at Cranfield University
- Condensed Matter Group at Edinburgh University
- Atomistic Simulation Group at Imperial College
- Computational Physics Group at Keele University
- Dr R. A. Jackson at Keele University
- Materials Modelling Laboratory at Oxford University
- Atomistic Simulation Group at the Queen's University of Belfast
- Prof. C. R. A. Catlow at the Royal Institution of Great Britain
- Dr W.C. Mackrodt at St Andrew's University
- Condensed Matter and Materials Physics Group at University College London
- Prof. G. D. Price at University College London
USA
- Condensed Matter Physics Group at Ames Laboratory
- Computational Materials Chemistry Group at Argonne National Laboratory
- Interfacial Materials Group at Argonne National Laboratory
- Materials and Process Simulation Center of the Beckman Institute at Caltech
- National Center for Supercomputing Applications (NCSA) at the University of Illinois Urbana-Champaign (UIUC)
- High Performance Computing Group at NASA's Jet Propulsion Laboratory
- Dr J. M. Rickman at Lehigh University
- Computation and Theory Group in the Dept of Chemical Engineering & Materials Science at the University of Minnesota
- Scientific Computational Analysis and Research of Materials (SCRAM) group in the Dept of Materials Science & Engineering at MIT
- Center for Computational Materials Science at the Naval Research Laboratory (NRL)
- Prof. M. H. Whangbo in the Department of Chemistry at North Carolina State University
- Computational Materials Science Group at North Carolina State University
- Dr V. Vitek at the University of Pennsylvania
- Dr E. A. Carter in the Dept of Mechanical & Aerospace Engineering at Princeton University
- Keck Materials Science Computing Center at Princeton University
- Interfacial Molecular Science Laboratory at Rutgers University
- Theoretical Condensed Matter Theory Group at Rutgers University
- Center for Materials Simulation of the Institute of Materials Science at the University of Connecticut
- Collaboratory (sic) for Advanced Computing and Simulations at the University of Southern California
- Prof. G. Kalonji at the University of Washington
Simulation Software
- DL_POLY, a molecular dynamics (MD) program for parallel computers by Bill Smith and Tim Forrester (CCLRC Daresbury Laboratory)
- DL Visualize, a graphics package for viewing atoms and molecules by the people at CCLRC Daresbury Laboratory
- GDIS, a graphics package for viewing atoms and molecules written by Sean Fleming at Curtin University
- gOpenMol, a visualization program for atoms and molecules from the Finnish IT Center for Science
- Gromacs, an MD program from the Department of Chemistry at the University of Groningen
- GULP, a multi-purpose program for simulating crystals by Julian Gale (Curtin University)
- Demmpsi, a molecular dynamics program by Mathijn Elhorst (Delft University of Technology)
- Marvin's Program, for studying surfaces and interfaces, by David Gay (Royal Institution) and Andrew Rohl (Curtin University)
- MOLDY, a general-purpose molecular dynamics program by Keith Refson (Rutherford Appleton Laboratory)
- SHELL, a free energy minimization program by Mark Taylor (Bristol University) and Gus Barrera (University of Buenos Aires)
- THOR, a hybrid MD, stochastic MC and Density Functional Theory program by Kleber Mundim (University of Brazilia)
- The Molecular Modelling Toolkit (MMTK), a simulation suite written in Python by Konrad Hinsen at the Centre de Biophysique Moléculaire (CNRS)
- Visual Molecular Dynamics (VMD), by the Theoretical Biophysics Group at the University of Illinois
- Penicillin, a nano-cluster molecular dynamics program by Alex Dornford-Smith and Volodya Bulatov (Imperial College)
- IMD, a massively parallel molecular dynamics program from the Institute for Theoretical and Applied Physics (Stuttgart University)
- CRYSTAL, a program for calculating the electronic structure of periodic systems by the Theoretical Chemistry Group at the University of Torino
- VEGA, molecular visualization software by the Drug Design Laboratory at the University of Milan
Free software specifically for academic users is also available from the CCP5 Program Library.
Other academic software requiring a licence fee include:
- VASP, an ab-initio molecular dynamics package from the University of Vienna
- BALSAC, a program for constructing crystal lattices and surfaces by Klaus Hermann at the Fritz Haber Institute
A comprehensive list of scientific software can be found at the National HPCC Software Exchange.
A library of software for modelling materials is also maintained by the Materials Algorithms Project (MAP).
Commercial software used in computational materials science can be found at these sites:
- Accelrys Inc (formerly MSI)
- Advanced Visual Systems Inc (AVS)
- Gaussian Inc
- Materials Design Inc
- Oxford Materials Ltd (OxMat)
- Research Systems Inc (RSI)
- Materials Explorer (Fujitsu)
- Shape Software
- Crystal Impact
- CrystalMaker
Also, check out the ComputeNano web site for computational materials science by Accelrys, HP and the Foresight Institute!
Online Tutorials
A number of web sites contain tutorials on the fundamentals of atomistic simulation, and molecular modelling (for systems other than ceramics) in general:
- The NIH Guide to Molecular Modelling
- Democritus - an MD tutorial from CCLRC Daresbury Laboratory
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